Water Contamination Test

About

Human fecal contamination of clean water sources is a major contributor to the spread of disease worldwide. To monitor and manage this threat, the United States Environmental Protection Agency (EPA), World Health Organization, and European Union rely on bacterial fecal indicator tests, but current methods lack specificity for discriminating human waste from other animal pollution sources, which limits effective handling. Currently recommended fecal indicators also target bacteria, even though viruses are reported to be the dominant cause of waterborne disease. In collaboration with the EPA, researchers at the University of Pittsburgh have developed novel real-time quantitative PCR-based assays that detect a common virus – Cross-Assembly phage (CrAssphage) – in the human gut. This technology is highly sensitive and specific to human waste. When there is a need to differentiate between human and non-human fecal sources of water pollution, CrAssphage could be a critical tool. Technology Description CrAssphage is a recently-discovered bacteriophage that is highly associated with human gut microbiota. The researchers developed a series of PCR primers targeting the CrAssphage genome and then screened them to identify the most sensitive and specific genetic markers for human fecal pollution. Optimal primer sets were adapted to a real-time quantitative PCR platform to allow measurement of human fecal waste concentrations in unknown test samples. Genetic markers were highly abundant in raw sewage samples from across the United States and exhibited high specificity when tested against an animal fecal reference library.